Fungal-Bacterial Interactions

How do plant associated microbes interact and how do these interactions scale up to the ecosystem level?

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This project is aimed at understanding diversity, ubiquity, and molecular mechanisms of plant associated bacterial fungal interactions. Some of these bacteria are free living and associated with the exterior of fungal cells. Others are long term, obligate, intracellular endosymbionts that rely on host fungal resources. To answer these questions we generate and analyze whole genome sequences, amplicon barcodes, multiple -omics data sets, and physiological assays.


How can we leverage single cell time lapse microscopy to study fungal biology with extreme precision?

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Mortierella elongata growing in a microfluidic chamber


This project includes designing, fabricating, and using microfluidic platforms for imaging microbial interactions and behaviors. By culturing microbes in microscopic chambers appressed to glass slides we are able to dissect microbial behaviors and interactions with great precision.